İptal Edildi

Bioinformatics programming in python(easy)

Problem 1

Let say I have a file name peaks.txt.

Chr1 7 9 4.5 5.5

chr10 6 9 3.5 4.5

chr1 10 6 2.5 4.4

Question is how can i sort the file so that it looks like this:

Chr1 7 9 4.5 5.5

chr1 10 6 2.5 4.4

chr10 6 9 3.5 4.5

Next is how do I extract out the p-values(i.e. 7,9,10,6,6,9)

After I extracted out all the p-values. for example all the p-values from chr1 is 6,7,9,10 and for chr10 are 6 and 9.

So for example if the p-value is 7 from chr1, i would open out a file called [login to view URL] which look like this:





and I will extract out the subsequence TACTA. Basically p-value(in this case its 7) position counting from second line of the [login to view URL] file and print out the subsequence from starting from position 7-d and 7+d, where d=2. Thus if the p-values is taken from chr10 then we read from the a file with file name [login to view URL] which can look like like:





So the question is how do I do this for all the p-values.(i.e all the p-values from chr1 and all the p-values from chr10) if let say we dont know [login to view URL] files have how many lines.

And how do i output it to a file such that it will have the following format:


peak value 6: TTGTA

peak value 7: TACTA

etc etc for all the p-values of chr1


peak value 7: TTACT

etc etc etc...

Problem 2, after generating the result, I wanna look for the number AGAACA or TGTTCT in the each sequences generated by each p-values. Plot an histogram with interval of together with the line graph. if d=2 then the x-axis is -2 to 2. So some conversion of values is need.

Take note I am working with bioinformatics so I hope you all can make use of numpy.

Note the above 2 problems are for Python.

The following problem are for microsoft access.

How do I port the output of a query straight away to an existing excel file. The data must be added to a specific starting cell.

Take note bidder need not bid for all the problems. However, Problem 1 and 2 are to be bid together. while problem 3 can be bid separately.


Deadline is next week since its just a simple project.

Beceriler: Biyoloji, Biyoteknoloji, Microsoft Access, Python

Daha fazlasını gör: python bioinformatics, x-axis, which graph to use for data, use of graph, use graph, use case simple example, starting programming, simple programming problems, simple graph problems, python programming problems, python look for file, programming with python, programming question in c, programming problems, programming number, programming in python 3, programming in python, programming in excel 2010, programming in excel, programming in access, programming if, programming graph, programming from, programming for excel, problem graph

İşveren Hakkında:
( 1 değerlendirme ) singapore, Singapore

Proje NO: #691735

Bu iş için 13 freelancer ortalamada $115 teklif veriyor


I will deliver the project

in %bids___i_period_sub_35% gün içinde180%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(23 Değerlendirme)

Dear Client, I am much familiar with Python programming related with bioinformatics and can help you out. Please get back to me as soon as possible if you need my help. With Regards, Koustav

in %bids___i_period_sub_35% gün içinde100%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(53 Değerlendirme)

Hi Sir, We are bidding for all 3 bids. And we need more information about the third bid. I am a python programmer and the leader of our python developing team. Our team consists of several programmmers with expertis Daha Fazla

in %bids___i_period_sub_35% gün içinde100%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(5 Değerlendirme)

I am ready. But the third problems, I will need more detail.

in %bids___i_period_sub_35% gün içinde200%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(1 Yorum)

please check your pm.

in %bids___i_period_sub_35% gün içinde30%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(1 Yorum)

Hi, unfortunately I'm flying until Monday but I could do the project that evening. I used to work in bioinformatics -- before greener pastures called. Anyway this is a simple enough job (I'm bidding on Problems 1 and 2 Daha Fazla

in %bids___i_period_sub_35% gün içinde40%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(1 Yorum)

Please check PMB, Thanks, Anil

in %bids___i_period_sub_35% gün içinde250%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(1 Yorum)

Hello, I have a lot of experience in python scripting and data manipulation. I can deliver you with the highest code quality and testing. I am interested to do problem 1 and problem 2. Regards

in %bids___i_period_sub_35% gün içinde100%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(0 Değerlendirme)

Hi I have a MS in Bioinformatics with 6+ years experience using Perl, BioPerl, BioJava, and PHP to develop and implement life sciences solutions for genomics and proteomics. My focus on this project was on gene predic Daha Fazla

in %bids___i_period_sub_35% gün içinde150%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(0 Değerlendirme)

I am experienced developer of bioinformatics software, though my previous work has been with MATLAB, I am well acquainted with Python and can certainly solve the specifically problems presented here in a clean, easily Daha Fazla

in %bids___i_period_sub_35% gün içinde30%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(0 Değerlendirme)

am ready for this project in a low amount..

in %bids___i_period_sub_35% gün içinde89%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(0 Değerlendirme)

i have about 12 years of experience and I have worked extensively with python. please consider giving me this work

in %bids___i_period_sub_35% gün içinde200%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(0 Değerlendirme)

Hi. I'd be happy to do this project for you. I am an expert at Python and could do this very quickly. See the PM I sent you, thanks. -Mark

in %bids___i_period_sub_35% gün içinde30%project_currencyDetails_sign_sub_37% %project_currencyDetails_code_sub_38%
(0 Değerlendirme)