# Bioinformatics programming in python(easy)

Problem 1

Let say I have a file name peaks.txt.

Chr1 7 9 4.5 5.5

chr10 6 9 3.5 4.5

chr1 10 6 2.5 4.4

Question is how can i sort the file so that it looks like this:

Chr1 7 9 4.5 5.5

chr1 10 6 2.5 4.4

chr10 6 9 3.5 4.5

Next is how do I extract out the p-values(i.e. 7,9,10,6,6,9)

After I extracted out all the p-values. for example all the p-values from chr1 is 6,7,9,10 and for chr10 are 6 and 9.

So for example if the p-value is 7 from chr1, i would open out a file called [url removed, login to view] which look like this:

>chr1

ATTGTACT

ATTTGTAT

ATTCGTCA

and I will extract out the subsequence TACTA. Basically p-value(in this case its 7) position counting from second line of the [url removed, login to view] file and print out the subsequence from starting from position 7-d and 7+d, where d=2. Thus if the p-values is taken from chr10 then we read from the a file with file name [url removed, login to view] which can look like like:

chr10

TTAGTACT

GTACTAGT

ACGTATTT

So the question is how do I do this for all the p-values.(i.e all the p-values from chr1 and all the p-values from chr10) if let say we dont know [url removed, login to view] files have how many lines.

And how do i output it to a file such that it will have the following format:

Chr1

peak value 6: TTGTA

peak value 7: TACTA

etc etc for all the p-values of chr1

chr10

peak value 7: TTACT

etc etc etc...

Problem 2, after generating the result, I wanna look for the number AGAACA or TGTTCT in the each sequences generated by each p-values. Plot an histogram with interval of together with the line graph. if d=2 then the x-axis is -2 to 2. So some conversion of values is need.

Take note I am working with bioinformatics so I hope you all can make use of numpy.

Note the above 2 problems are for Python.

The following problem are for microsoft access.

How do I port the output of a query straight away to an existing excel file. The data must be added to a specific starting cell.

Take note bidder need not bid for all the problems. However, Problem 1 and 2 are to be bid together. while problem 3 can be bid separately.

Thanks.

Deadline is next week since its just a simple project.

Beceriler: Biyoloji, Biyoteknoloji, Microsoft Access, Python

İşveren Hakkında:
( 1 değerlendirme ) singapore, Singapore

Proje NO: #691735

## 14 freelancer bu iş için ortalamada 111\$ teklif veriyor

srinichal

I will deliver the project

in 4 gün içinde180\$ USD
(14 Değerlendirme)
5.1
cyware

This bid is for the third problem (the query2specific_excel_cell). I have lots of experience with this. The first problems can also be very elegantly solved in Access if there is an interest in doing it.

1 gün içinde 50\$ USD
(14 Değerlendirme)
4.9
friman78

I am ready. But the third problems, I will need more detail.

in 5 gün içinde200\$ USD
(1 Değerlendirme)
2.4
aa2cc6

Hi Sir, We are bidding for all 3 bids. And we need more information about the third bid. I am a python programmer and the leader of our python developing team. Our team consists of several programmmers with expertis Daha fazlası

in 6 gün içinde100\$ USD
(2 Değerlendirme)
2.1
kcmakkena

in 2 gün içinde30\$ USD
(1 Değerlendirme)
1.4

Hi, unfortunately I'm flying until Monday but I could do the project that evening. I used to work in bioinformatics -- before greener pastures called. Anyway this is a simple enough job (I'm bidding on Problems 1 and 2 Daha fazlası

in 3 gün içinde40\$ USD
(1 Değerlendirme)
1.2
anilankv

in 7 gün içinde250\$ USD
(1 Değerlendirme)
2.3
celext

Hello, I have a lot of experience in python scripting and data manipulation. I can deliver you with the highest code quality and testing. I am interested to do problem 1 and problem 2. Regards

in 5 gün içinde100\$ USD
(0 Değerlendirme)
0.0
koustav2006

Dear Client, I am much familiar with Python programming related with bioinformatics and can help you out. Please get back to me as soon as possible if you need my help. With Regards, Koustav

in 3 gün içinde100\$ USD
(0 Değerlendirme)
0.0
sailavish

Hi I have a MS in Bioinformatics with 6+ years experience using Perl, BioPerl, BioJava, and PHP to develop and implement life sciences solutions for genomics and proteomics. My focus on this project was on gene predic Daha fazlası

in 5 gün içinde150\$ USD
(0 Değerlendirme)
0.0
Debian44

I am experienced developer of bioinformatics software, though my previous work has been with MATLAB, I am well acquainted with Python and can certainly solve the specifically problems presented here in a clean, easily Daha fazlası

in 5 gün içinde30\$ USD
(0 Değerlendirme)
0.0
salimnazar

am ready for this project in a low amount..

in 4 gün içinde89\$ USD
(0 Değerlendirme)
0.0
pbehera

i have about 12 years of experience and I have worked extensively with python. please consider giving me this work

in 5 gün içinde200\$ USD
(0 Değerlendirme)
0.0
markogh

Hi. I'd be happy to do this project for you. I am an expert at Python and could do this very quickly. See the PM I sent you, thanks. -Mark

in 2 gün içinde30\$ USD
(0 Değerlendirme)
2.8