A simple python script (preferably bioinformatics)
Bütçe $10-30 USD
Job Description:
I need a Python script to compare two input files that will look like the [login to view URL] and [login to view URL] to produce an [login to view URL] file.
Step 1:
- First, delete each odd line in an input file, creating a stack of lines, where each line contains only these letters: A, G, C, T and -:
For example, if an input file contains four lines:
>Blablabla1
ATTA-
>Blablabla2
TTT-T
Then the output will look like:
ATTA-
TTT-T
- Second, go letter by letter and calculate the content for column
In our example, the stack of lines:
ATTA-
TTT-T
Will be transformed into this table:
Position, A(%), T(%), G(%), C(%), -(%)
1, 50, 50, 0, 0, 0
2, 0, 100, 0, 0, 0
3, 0, 100, 0, 0, 0
4, 50, 0, 0, 0, 50
5, 0, 50, 0, 0, 50
Step 2:
When both input files are converted into their corresponding “content tables”, the script should subtract one of these tables from another to create a “difference content table”.
For example, if the first content table looks like this:
Position, A(%), T(%), G(%), C(%), -(%)
1, 50, 50, 0, 0, 0
2, 0, 100, 0, 0, 0
And the second one looks like this,
Position, A(%), T(%), G(%), C(%), -(%)
1, 50, 50, 0, 0, 0
2, 0, 50, 0, 50, 0
Then, the resulting table will look like this:
Position, A(%), T(%), G(%), C(%), -(%)
1, 0, 0, 0, 0, 0
2, 0, 50, 0, -50, 0
This resulting table should be saved as a [login to view URL] file.
Hope this is clear
Seçilen:
This seems like a simple data processing + file reading/writing task. I’ve worked on similar projects before but not on bioinformatics. I have experience in Python and Matlab, you can check my github below: https://gi Daha Fazla
Hi there, I'm a Pharmacist and a Python programmer. I understand you need a python script that would: Input: Two files TO-DO: Calculate Consensus sequence which is the percentage of each nucleotide for each position fo Daha Fazla
Bu iş için 11 freelancer ortalamada $33 teklif veriyor
Hello, I hope this finds you well. I have just seen your project requiring; Python Data Visualization I believe that my 10-year experience in this field is what you need right away. Avoid the headache of looking furth Daha Fazla
✅✅✅ Full Experiences in Python and Visualization ✅✅✅ Hi, Dear! I read your requirement carefully. I can do your work perfectly. I can start Your work right now... Hope to discuss with you soon. Thanks & Best regards! h Daha Fazla
Expert HERE!!! Thanks for you job post! I just done a project such as yours so I can satisfy you perfectly with my skills and experiences. If you hire me, then you will never regret and I will do my best. I hope see yo Daha Fazla
Hi I have read your description carefully. ⭐ I have rich experiences in Python, Machine learning, AI, Deep learning, Image processing. ⭐ I worked on many similar projects. I can guarantee the quality of the job. Please Daha Fazla
Greetings! Thanks for your job posting. I read your project details and i understood all. I can help you with your project at a high level! I have rich experience in Python developing. My skills and experience is a g Daha Fazla
Hello, I have read and understood the basics and prompts of this task. Given a chance, I will deliver a masterpiece. My experience in this field and completed orders allow me to work on this assignment efficiently. Kin Daha Fazla
